The two teams were level 1-1 after Hakim Ziyech's 27th-minute goal was cancelled out by Villarreal's Gerard Moreno in the 73rd minute, taking the match into extra time.
The world's top-ranked team beat Finland 2-0 on Monday to finish in first place in Group B and join Italy and the Netherlands in qualifying with maximum points.
The 36-year-old Ronaldo also became the only player to score at five consecutive European Championships.
Eriksen was given treatment for about 10 minutes after collapsing on the field before being carried off on a stretcher
Roberto Mancini's team has begun its first major international tournament in five years with a convincing 3-0 win over Turkey.
Twenty-four teams have been divided across six groups and Group H comprises of France, Germany, Portugal and Hungary and is being labelled as the 'Group of Death'.
There was "no doubt" in the position of the world football governing body on the matter, Infantino said at the congress of European confederation UEFA on Tuesday, DPA reports
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