Justice Pankaj Bhatia denied the bail plea submitted by Inamul Haq, who had an FIR filed against him at Uttar Pradesh's Saharanpur's Deoband police station under Sections 121-A and 153-A.
Naidu had blamed the state's Energy Minister Peddireddy Ramachandra Reddy for the violence and lashed out at the police for supporting the ruling party.
He added that there is no question of handing over the case to the SIT as a Deputy Superintendent of Police-level officer is conducting the investigation.
An FIR under various sections of the Indian Penal Code (IPC) including 354, 354A, 354D, 509, 376, 506ii and 323 IPC was registered against the accused, police said.